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iSEEpathways, iSEEtree, iSEEu, igvR, igvShiny, illuminaio, imcRtools, immunoClust, immunogenViewer, immunotation, infercnv, isomiRs, ivygapSE, karyoploteR, katdetectr, kmcut, koinar, ldblock, lefser, lemur, levi, limma, limpca, lineagespot, lipidr, lisaClust, loci2path, lpsymphony, lute, m6Aboost, made4, magpie, magrene, marr, maser, mastR, matter, mbkmeans, megadepth, messina, metabCombiner, metabinR, metabolomicsWorkbenchR, metagene2, metapod, metaseqR2, methInheritSim, methimpute, methyLImp2, methylCC, methylInheritance, methylSig, methylclock, methylscaper, mfa, miQC, miRSM, miRcomp, miRspongeR, miaSim, miaViz, mia, microSTASIS, microbiome, miloR, mimager, minfi, mirTarRnaSeq, missMethyl, missRows, mistyR, mixOmics, mnem, moanin, mobileRNA, mogsa, monaLisa, mosbi, mosdef, motifStack, motifTestR, motifbreakR, mpra, msImpute, msPurity, mslp, msqrob2, multiGSEA, multiHiCcompare, multiMiR, multiWGCNA, multicrispr, multistateQTL, mumosa, musicatk, mygene, myvariant, mzR, ncRNAtools, ndexr, nempi, netSmooth, nethet, netprioR, ngsReports, nipalsMCIA, nnSVG, normr, npGSEA, nucleR, nucleoSim, oligo, omicRexposome, omicade4, omicsPrint, omicsViewer, oncoscanR, ontoProc, optimalFlow, orthogene, orthos, packFinder, padma, pairedGSEA, pairkat, parglms, parody, pathlinkR, pfamAnalyzeR, pgxRpi, phantasusLite, phantasus, phenomis, phenopath, philr, phyloseq, piano, pipeComp, planttfhunter, plasmut, plotGrouper, plyinteractions, plyranges, pmp, pogos, powerTCR, ppcseq, pqsfinder, pram, preciseTAD, proDA, profileScoreDist, profileplyr, progeny, projectR, qcmetrics, qmtools, qpgraph, qsea, qsmooth, qsvaR, quantiseqr, quantro, rCGH, rSWeeP, rScudo, rTRM, rWikiPathways, raer, rain, ramwas, randRotation, rawDiag, rawrr, rcellminer, recount3, recount, recountmethylation, recoup, regionalpcs, regioneR, regioneReloaded, regsplice, regutools, retrofit, rexposome, rfPred, rfaRm, rgoslin, rhdf5, rhdf5client, rhdf5filters, rhinotypeR, riboSeqR, ribosomeProfilingQC, rifiComparative, rifi, rnaseqcomp, roastgsa, rols, ropls, rprimer, rpx, rqt, rrvgo, rsemmed, sRACIPE, sSNAPPY, sampleClassifier, sangerseqR, satuRn, scBubbletree, scCB2, scClassify, scDD, scDDboost, scDblFinder, scDesign3, scDiagnostics, scDotPlot, scFeatureFilter, scFeatures, scMerge, scMitoMut, scPCA, scPipe, scRNAseqApp, scReClassify, scRepertoire, scTHI, scTreeViz, scanMiRApp, scanMiR, scater, sccomp, scds, scifer, scmap, scone, scoreInvHap, scoup, scp, scran, scrapper, screenCounter, scruff, scuttle, scviR, seahtrue, sechm, segmentSeq, selectKSigs, seq.hotSPOT, seqCAT, seqLogo, seqPattern, seqsetvis, sesame, sevenC, shinyMethyl, shinyepico, signatureSearch, simPIC, similaRpeak, simpleSeg, sincell, singleCellTK, singscore, sitadela, sitePath, sketchR, slalom, slingshot, smartid, smoothclust, snapcount, snifter, soGGi, spaSim, sparrow, sparseMatrixStats, sparsenetgls, spatialDE, spatialHeatmap, specL, speckle, spicyR, spillR, splatter, splots, spqn, ssrch, stJoincount, stageR, statTarget, strandCheckR, structToolbox, struct, svaRetro, sva, swfdr, switchde, synapsis, synlet, syntenet, systemPipeR, systemPipeShiny, systemPipeTools, tRNA, tRNAdbImport, tRNAscanImport, tadar, tanggle, tenXplore, terraTCGAdata, tidyCoverage, tidyFlowCore, tidySingleCellExperiment, tidySpatialExperiment, tidySummarizedExperiment, tidybulk, tidysbml, tigre, timeOmics, tomoda, tomoseqr, topconfects, tpSVG, trackViewer, tracktables, transcriptR, transcriptogramer, transformGamPoi, transmogR, transomics2cytoscape, treeclimbR, treekoR, tricycle, tripr, twoddpcr, txcutr, txdbmaker, uncoverappLib, updateObject, velociraptor, vidger, vissE, vsclust, vsn, wateRmelon, wavClusteR, weitrix, wpm, xcore, xenLite, yamss, zellkonverter, zinbwave, zitools, zlibbioc, AHEnsDbs, AHLRBaseDbs, AHMeSHDbs, AHPathbankDbs, AHPubMedDbs, AHWikipathwaysDbs, AlphaMissense.v2023.hg19, AlphaMissense.v2023.hg38, ath1121501frmavecs, cadd.v1.6.hg19, cadd.v1.6.hg38, CTCF, EpiTxDb.Hs.hg38, EpiTxDb.Mm.mm10, EpiTxDb.Sc.sacCer3, EuPathDB, excluderanges, geneplast.data, GenomicState, hpAnnot, JASPAR2022, JASPAR2024, phastCons35way.UCSC.mm39, phyloP35way.UCSC.mm39, rat2302frmavecs, SomaScan.db, synaptome.data, TENET.AnnotationHub, UCSCRepeatMasker, ASICSdata, benchmarkfdrData2019, BioImageDbs, BioPlex, blimaTestingData, BloodCancerMultiOmics2017, bodymapRat, brgedata, bugphyzz, CardinalWorkflows, celldex, CellMapperData, cfToolsData, chipenrich.data, ChIPexoQualExample, chipseqDBData, CLLmethylation, clustifyrdatahub, CopyhelpeR, CoSIAdata, COSMIC.67, crisprScoreData, curatedBladderData, curatedMetagenomicData, curatedOvarianData, curatedPCaData, curatedTBData, curatedTCGAData, CytoMethIC, DAPARdata, depmap, derfinderData, DExMAdata, DmelSGI, DNAZooData, dorothea, DropletTestFiles, DuoClustering2018, easierData, ELMER.data, emtdata, eoPredData, epimutacionsData, ewceData, fourDNData, furrowSeg, gDNAinRNAseqData, gDRtestData, GenomicDistributionsData, GeuvadisTranscriptExpr, GSE103322, GSE13015, GSE159526, GSE62944, HarmanData, HCAData, HCATonsilData, HD2013SGI, HDCytoData, healthyControlsPresenceChecker, HelloRangesData, HiCDataHumanIMR90, HiContactsData, HighlyReplicatedRNASeq, Hiiragi2013, HMP16SData, HMP2Data, HumanAffyData, IHWpaper, imcdatasets, JohnsonKinaseData, LegATo, LRcellTypeMarkers, mCSEAdata, mcsurvdata, MerfishData, MetaGxOvarian, MetaGxPancreas, MetaScope, MethylAidData, methylclockData, MethylSeqData, MicrobiomeBenchmarkData, microbiomeDataSets, minionSummaryData, MOFAdata, MouseAgingData, MouseGastrulationData, MouseThymusAgeing, msigdb, MSMB, msqc1, multiWGCNAdata, muscData, nanotubes, NestLink, NetActivityData, OnassisJavaLibs, optimalFlowData, orthosData, parathyroidSE, pasilla, PasillaTranscriptExpr, PCHiCdata, PepsNMRData, preciseTADhub, ProteinGymR, ptairData, raerdata, rcellminerData, RforProteomics, RGMQLlib, RNAmodR.Data, RnaSeqSampleSizeData, sampleClassifierData, scaeData, scanMiRData, scATAC.Explorer, SCLCBam, scMultiome, scpdata, scRNAseq, seventyGeneData, SFEData, SimBenchData, Single.mTEC.Transcriptomes, SingleCellMultiModal, smokingMouse, SpatialDatasets, spatialDmelxsim, spatialLIBD, STexampleData, SubcellularSpatialData, systemPipeRdata, TabulaMurisData, TabulaMurisSenisData, tartare, TCGAbiolinksGUI.data, TCGAWorkflowData, TENxBrainData, TENxBUSData, TENxPBMCData, TENxVisiumData, TENxXeniumData, timecoursedata, TimerQuant, tissueTreg, TMExplorer, TransOmicsData, tuberculosis, tweeDEseqCountData, VariantToolsData, VectraPolarisData, WeberDivechaLCdata, zebrafishRNASeq, annotation, arrays, BiocMetaWorkflow, CAGEWorkflow, chipseqDB, csawUsersGuide, EGSEA123, ExpressionNormalizationWorkflow, generegulation, highthroughputassays, liftOver, maEndToEnd, recountWorkflow, RNAseq123, seqpac, sequencing, SingscoreAMLMutations, spicyWorkflow, variants, aIc, asteRisk, BiocManager, corrmeta, cyjShiny, DEHOGT, EHRtemporalVariability, genetic.algo.optimizeR, ggBubbles, GSEMA, ipsRdbs, magmaR, MarZIC, multiclassPairs, MVN, net4pg, NutrienTrackeR, openSkies, PlackettLuce, Rediscover, rjsoncons, rworkflows, SCIntRuler, StepReg, TFactSR |
