MsBackendMsp

This is the development version of MsBackendMsp; for the stable release version, see MsBackendMsp.

Mass Spectrometry Data Backend for NIST msp Files

Bioconductor version: Development (3.21)

Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.

Author: Neumann Steffen [aut] (ORCID: ), Johannes Rainer [aut, cre] (ORCID: ), Michael Witting [ctb] (ORCID: )

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Citation (from within R, enter citation("MsBackendMsp")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MsBackendMsp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMsp")

MsBackendMsp	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version	1.11.0
In Bioconductor since	BioC 3.15 (R-4.2) (2.5 years)
License	Artistic-2.0
Depends	R (>= 4.1.0), Spectra(>= 1.5.14)
Imports	ProtGenerics(>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats
System Requirements
URL	https://github.com/RforMassSpectrometry/MsBackendMsp
Bug Reports	https://github.com/RforMassSpectrometry/MsBackendMsp/issues

Suggests	testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MsBackendMsp_1.11.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MsBackendMsp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MsBackendMsp
Bioc Package Browser	https://code.bioconductor.org/browse/MsBackendMsp/
Package Short Url	https://bioconductor.org/packages/MsBackendMsp/
Package Downloads Report	Download Stats