MouseAgingData

This is the development version of MouseAgingData; for the stable release version, see MouseAgingData.

Multi-omics data access for studies investigating the effects of aging

Bioconductor version: Development (3.21)

The MouseAgingData package provides analysis-ready data resources from different studies focused on aging and rejuvenation in mice. The package currently provides two 10x Genomics single-cell RNA-seq datasets. The first study profiled the aging mouse brain measured across 37,089 cells (Ximerakis et al., 2019). The second study investigated parabiosis by profiling a total of 105,329 cells (Ximerakis & Holton et al., 2023). The datasets are provided as SingleCellExperiment objects and provide raw UMI counts and cell metadata.

Author: Tram Nguyen [aut, cre] (ORCID: ), Kris Holton [aut], Tyrone Lee [aut], Nitesh Turaga [ctb], Ludwig Geistlinger [aut], Robert Gentleman [aut]

Maintainer: Tram Nguyen <Tram_Nguyen at hms.harvard.edu>

Citation (from within R, enter citation("MouseAgingData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MouseAgingData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseAgingData")

Accessing and Visualizing Parabiosis Droplet Data	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, PackageTypeData, RNASeqData, SequencingData, SingleCellData
Version	1.1.0
License	Artistic-2.0
Depends	R (>= 4.4.0), SingleCellExperiment
Imports	AnnotationHub, ExperimentHub
System Requirements
URL	https://github.com/ccb-hms/MouseAgingData
Bug Reports	https://github.com/ccb-hms/MouseAgingData/issues

Suggests	BiocStyle, knitr, rmarkdown, scater
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MouseAgingData_1.1.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MouseAgingData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MouseAgingData
Package Short Url	https://bioconductor.org/packages/MouseAgingData/
Package Downloads Report	Download Stats