HoloFoodR
This is the development version of HoloFoodR; for the stable release version, see HoloFoodR.
R interface to EBI HoloFood resource
Bioconductor version: Development (3.21)
Utility package to facilitate integration and analysis of EBI HoloFood data in R. This package streamlines access to the resource, allowing for direct loading of data into formats optimized for downstream analytics.
Author: Tuomas Borman [aut, cre] (ORCID:
Maintainer: Tuomas Borman <tuomas.v.borman at utu.fi>
citation("HoloFoodR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("HoloFoodR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HoloFoodR")| HoloFoodR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.1.0 |
| In Bioconductor since | BioC 3.20 (R-4.4) (< 6 months) |
| License | Artistic-2.0 | file LICENSE |
| Depends | R (>= 4.4.0), TreeSummarizedExperiment, MultiAssayExperiment |
| Imports | dplyr, httr2, jsonlite, S4Vectors, stats, utils |
| System Requirements | |
| URL | https://github.com/EBI-Metagenomics/HoloFoodR |
| Bug Reports | https://github.com/EBI-Metagenomics/HoloFoodR/issues |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HoloFoodR_1.1.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HoloFoodR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HoloFoodR |
| Bioc Package Browser | https://code.bioconductor.org/browse/HoloFoodR/ |
| Package Short Url | https://bioconductor.org/packages/HoloFoodR/ |
| Package Downloads Report | Download Stats |