densvis
This is the development version of densvis; for the stable release version, see densvis.
Density-Preserving Data Visualization via Non-Linear Dimensionality Reduction
Bioconductor version: Development (3.21)
Implements the density-preserving modification to t-SNE and UMAP described by Narayan et al. (2020)
Author: Alan O'Callaghan [aut, cre], Ashwinn Narayan [aut], Hyunghoon Cho [aut]
Maintainer: Alan O'Callaghan <alan.ocallaghan at outlook.com>
citation("densvis")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("densvis")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("densvis")
Introduction to densvis | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DimensionReduction, Sequencing, SingleCell, Software, Visualization |
Version | 1.17.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
License | MIT + file LICENSE |
Depends | |
Imports | Rcpp, basilisk, assertthat, reticulate, Rtsne, irlba |
System Requirements | |
URL | https://bioconductor.org/packages/densvis |
Bug Reports | https://github.com/Alanocallaghan/densvis/issues |
See More
Suggests | knitr, rmarkdown, BiocStyle, ggplot2, uwot, testthat |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | scater |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | densvis_1.17.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/densvis |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/densvis |
Bioc Package Browser | https://code.bioconductor.org/browse/densvis/ |
Package Short Url | https://bioconductor.org/packages/densvis/ |
Package Downloads Report | Download Stats |