geneplotter
This is the development version of geneplotter; for the stable release version, see geneplotter.
Graphics related functions for Bioconductor
Bioconductor version: Development (3.21)
Functions for plotting genomic data
Author: Robert Gentleman [aut], Rohit Satyam [ctb] (Converted geneplotter vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("geneplotter")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("geneplotter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geneplotter")| How to Assemble a chromLocation Object | HTML | R Script |
| Visualization of Microarray Data | R Script | |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | Software, Visualization |
| Version | 1.85.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), methods, Biobase, BiocGenerics, lattice, annotate |
| Imports | AnnotationDbi, graphics, grDevices, grid, RColorBrewer, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db, BiocStyle, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | HD2013SGI, Hiiragi2013, maEndToEnd |
| Imports Me | DEXSeq, MethylSeekR, biocGraph |
| Suggests Me | Category, EnrichmentBrowser, biocGraph, Single.mTEC.Transcriptomes |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | geneplotter_1.85.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/geneplotter |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/geneplotter |
| Bioc Package Browser | https://code.bioconductor.org/browse/geneplotter/ |
| Package Short Url | https://bioconductor.org/packages/geneplotter/ |
| Package Downloads Report | Download Stats |