OmicsMLRepoR
This is the development version of OmicsMLRepoR; for the stable release version, see OmicsMLRepoR.
Search harmonized metadata created under the OmicsMLRepo project
Bioconductor version: Development (3.21)
This package provides functions to browse the harmonized metadata for large omics databases. This package also supports data navigation if the metadata incorporates ontology.
Author: Sehyun Oh [aut, cre] (ORCID:
Maintainer: Sehyun Oh <shbrief at gmail.com>
citation("OmicsMLRepoR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("OmicsMLRepoR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OmicsMLRepoR")| Quickstart | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 1.1.0 |
| In Bioconductor since | BioC 3.20 (R-4.4) (< 6 months) |
| License | Artistic-2.0 |
| Depends | R (>= 4.4.0) |
| Imports | dplyr, stringr, rols, tidyr, methods, stats, tibble, data.tree, jsonlite, plyr, BiocFileCache, readr, DiagrammeR, rlang, lubridate |
| System Requirements | |
| URL | https://github.com/shbrief/OmicsMLRepoR |
| Bug Reports | https://github.com/shbrief/OmicsMLRepoR/issues |
See More
| Suggests | arrow, knitr, BiocStyle, curatedMetagenomicData, testthat (>= 3.0.0), cBioPortalData |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OmicsMLRepoR_1.1.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/OmicsMLRepoR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OmicsMLRepoR |
| Bioc Package Browser | https://code.bioconductor.org/browse/OmicsMLRepoR/ |
| Package Short Url | https://bioconductor.org/packages/OmicsMLRepoR/ |
| Package Downloads Report | Download Stats |