AnVILWorkflow

This is the development version of AnVILWorkflow; for the stable release version, see AnVILWorkflow.

Run workflows implemented in Terra/AnVIL workspace

Bioconductor version: Development (3.21)

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The main cloud-based genomics platform deported by the AnVIL project is Terra. The AnVILWorkflow package allows remote access to Terra implemented workflows, enabling end-user to utilize Terra/ AnVIL provided resources - such as data, workflows, and flexible/scalble computing resources - through the conventional R functions.

Author: Sehyun Oh [aut, cre] (ORCID: ), Marcel Ramos [ctb] (ORCID: ), Kai Gravel-Pucillo [aut]

Maintainer: Sehyun Oh <shbrief at gmail.com>

Citation (from within R, enter citation("AnVILWorkflow")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AnVILWorkflow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILWorkflow")

Quickstart - RNAseq analysis using salmon	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	1.7.1
In Bioconductor since	BioC 3.17 (R-4.3) (1.5 years)
License	Artistic-2.0
Depends	R (>= 4.4.0), AnVILGCP, AnVILBase, httr
Imports	AnVIL, dplyr, jsonlite, rlang, tibble, tidyr, utils, methods, plyr, stringr
System Requirements
URL	https://github.com/shbrief/AnVILWorkflow
Bug Reports	https://github.com/shbrief/AnVILWorkflow/issues

Suggests	knitr, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AnVILWorkflow_1.7.1.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/AnVILWorkflow
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AnVILWorkflow
Bioc Package Browser	https://code.bioconductor.org/browse/AnVILWorkflow/
Package Short Url	https://bioconductor.org/packages/AnVILWorkflow/
Package Downloads Report	Download Stats