Rhtslib
This is the development version of Rhtslib; for the stable release version, see Rhtslib.
HTSlib high-throughput sequencing library as an R package
Bioconductor version: Development (3.21)
This package provides version 1.18 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").
Author: Nathaniel Hayden [led, aut], Martin Morgan [aut], Hervé Pagès [aut, cre], Tomas Kalibera [ctb], Jeroen Ooms [ctb]
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("Rhtslib")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Rhtslib")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rhtslib")| Motivation and use of Rhtslib | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Sequencing, Software |
| Version | 3.3.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
| License | LGPL (>= 2) |
| Depends | |
| Imports | tools, zlibbioc |
| System Requirements | libbz2 & liblzma & libcurl (with header files), GNU make |
| URL | https://bioconductor.org/packages/Rhtslib http://www.htslib.org/ |
| Bug Reports | https://github.com/Bioconductor/Rhtslib/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | zlibbioc |
| Enhances | |
| Depends On Me | |
| Imports Me | deepSNV, diffHic, maftools, mitoClone2, scPipe |
| Suggests Me | |
| Links To Me | DiffBind, FLAMES, QuasR, Rfastp, Rsamtools, ShortRead, VariantAnnotation, bamsignals, csaw, deepSNV, diffHic, epialleleR, h5vc, maftools, methylKit, mitoClone2, podkat, raer, scPipe, jackalope |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rhtslib_3.3.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Rhtslib |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rhtslib |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rhtslib/ |
| Package Short Url | https://bioconductor.org/packages/Rhtslib/ |
| Package Downloads Report | Download Stats |