| Depends On Me |
ACME, ATACseqQC, AnnotationDbi, AnnotationForge, AnnotationHub, BSgenomeForge, BSgenome, Biobase, Biostrings, CRISPRseek, Cardinal, Category, ChIPseqR, ChromHeatMap, CoreGx, DelayedArray, ExperimentHubData, ExperimentHub, GDSArray, GSEABase, GUIDEseq, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicRanges, GenomicScores, HelloRanges, IRanges, ISLET, MBASED, MGnifyR, MLInterfaces, MotifDb, NADfinder, OrganismDbi, PWMEnrich, QSutils, REDseq, RPA, RareVariantVis, Rarr, Repitools, RnBeads, S4Arrays, S4Vectors, ShortRead, SparseArray, StructuralVariantAnnotation, TEQC, UNDO, UniProt.ws, VCFArray, VanillaICE, VariantAnnotation, VariantFiltering, XVector, affyPLM, affy, altcdfenvs, amplican, beadarray, bioassayR, bnbc, bsseq, chipseq, clusterExperiment, codelink, consensusDE, consensusSeekeR, cummeRbund, ensembldb, geneplotter, genomeIntervals, ggbio, girafe, graph, interactiveDisplayBase, interactiveDisplay, lute, minfi, mpra, multtest, ngsReports, oligo, plyranges, profileplyr, pwalign, rsbml, soGGi, spqn, svaNUMT, svaRetro, tigre, topGO, txdbmaker, updateObject, yamss, ChAMPdata, liftOver, rsolr |
| Imports Me |
ASpli, ATACseqTFEA, AUCell, AllelicImbalance, AneuFinder, AnnotationHubData, BASiCS, BUSpaRse, BiSeq, BiocBook, BiocIO, BiocSingular, BrowserViz, BubbleTree, CAGEfightR, CAGEr, CNEr, CNVPanelizer, CNVRanger, COCOA, CTexploreR, CellBench, CellMixS, CellTrails, ChIPQC, ChIPpeakAnno, ChIPseeker, ChemmineOB, ChemmineR, CircSeqAlignTk, CleanUpRNAseq, CompoundDb, CuratedAtlasQueryR, DAMEfinder, DEGreport, DEScan2, DESeq2, DESpace, DEWSeq, DEXSeq, DFplyr, DNAfusion, DRIMSeq, DegCre, DelayedDataFrame, DirichletMultinomial, DiscoRhythm, DropletUtils, DrugVsDisease, EBImage, EDASeq, EnrichDO, EpiCompare, EpiTxDb, FLAMES, FRASER, FamAgg, FindIT2, FlowSOM, GA4GHclient, GA4GHshiny, GENESIS, GOTHiC, GenVisR, GenomAutomorphism, GenomicAlignments, GenomicInteractions, GenomicPlot, GenomicTuples, GeomxTools, Gviz, HDF5Array, HiCDOC, HiCExperiment, HiContacts, HiLDA, HicAggR, IHW, IMAS, INSPEcT, IONiseR, IVAS, IntEREst, InteractionSet, IsoformSwitchAnalyzeR, KCsmart, LOLA, LinTInd, MAST, MEAL, MIRA, MetaboAnnotation, MethylAid, MiRaGE, MinimumDistance, Modstrings, Moonlight2R, Motif2Site, MsBackendSql, MsExperiment, MultiAssayExperiment, MultiDataSet, MultimodalExperiment, MutationalPatterns, NanoStringNCTools, ORFik, OUTRIDER, PING, PIPETS, PSMatch, PhIPData, PharmacoGx, PhosR, ProteoDisco, PureCN, QFeatures, QTLExperiment, QuasR, R3CPET, R453Plus1Toolbox, RCAS, RCy3, RCyjs, REMP, RGSEA, RJMCMCNucleosomes, RNAmodR.AlkAnilineSeq, RNAmodR.ML, RNAmodR.RiboMethSeq, RNAmodR, RNAseqCovarImpute, RTCGAToolbox, RadioGx, RaggedExperiment, RcisTarget, RiboCrypt, RiboDiPA, RiboProfiling, Rqc, Rsamtools, SC3, SCArray.sat, SCOPE, SCnorm, SGSeq, SNPhood, SQLDataFrame, SeqVarTools, SharedObject, SingleCellExperiment, SingleMoleculeFootprinting, SpatialExperiment, SpatialFeatureExperiment, Spectra, SpliceWiz, SplicingGraphs, StabMap, Streamer, Structstrings, SummarizedExperiment, SynMut, TAPseq, TCGAutils, TCseq, TENxIO, TFBSTools, TVTB, TitanCNA, ToxicoGx, TreeSummarizedExperiment, UMI4Cats, Ularcirc, VariantTools, VisiumIO, XDE, XVector, a4Preproc, affylmGUI, alabaster.bumpy, alabaster.files, alabaster.matrix, alabaster.ranges, alabaster.se, annmap, annotate, atena, autonomics, bambu, bamsignals, batchelor, beachmat, bigmelon, biocGraph, biotmle, biovizBase, biscuiteer, blima, breakpointR, bumphunter, casper, celaref, cfDNAPro, cghMCR, chipenrich, chipseq, chromVAR, cicero, clusterSeq, cn.mops, cola, compEpiTools, concordexR, crisprBase, crisprBowtie, crisprBwa, crisprDesign, crisprScore, crisprShiny, crisprViz, crlmm, csaw, cummeRbund, cydar, dada2, dagLogo, ddCt, decompTumor2Sig, deconvR, demuxSNP, derfinder, diffHic, diffcoexp, dinoR, easyRNASeq, eiR, eisaR, enhancerHomologSearch, epialleleR, epigenomix, epimutacions, epistack, epivizrChart, epivizrStandalone, erma, esATAC, factR, fastseg, ffpe, flowBin, flowClust, flowCore, flowFP, flowSpecs, flowStats, flowWorkspace, fmcsR, frma, gDNAx, gINTomics, gcapc, geneAttribution, geneClassifiers, geomeTriD, glmGamPoi, gmapR, gmoviz, goseq, gpuMagic, heatmaps, hermes, hiReadsProcessor, hopach, iSEE, icetea, igvR, igvShiny, infercnv, intansv, isomiRs, ldblock, lemur, lisaClust, mariner, maser, matter, meshr, metaseqR2, methInheritSim, methylPipe, methylumi, miaViz, mia, miloR, mimager, missMethyl, mobileRNA, mogsa, monaLisa, monocle, motifbreakR, msa, multiMiR, multicrispr, mumosa, mzR, nearBynding, npGSEA, nucleR, oligoClasses, openPrimeR, parglms, pcaMethods, pdInfoBuilder, phyloseq, piano, plyinteractions, podkat, pram, primirTSS, proDA, profileScoreDist, qsea, rScudo, raer, ramr, ramwas, recoup, ribosomeProfilingQC, rnaEditr, roar, rols, rqubic, rsbml, rtracklayer, sRACIPE, saseR, scDblFinder, scDotPlot, scPipe, scater, scmap, scran, scruff, scuttle, sevenC, shinyMethyl, signatureSearch, signeR, simPIC, sitadela, snpStats, sparrow, spatzie, splatter, sscu, standR, strandCheckR, systemPipeR, tRNA, tRNAscanImport, tadar, target, tidySpatialExperiment, trackViewer, transcriptR, transite, txcutr, uSORT, unifiedWMWqPCR, universalmotif, velociraptor, wavClusteR, weitrix, zitools, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, chipenrich.data, curatedOvarianData, gDNAinRNAseqData, homosapienDEE2CellScore, IHWpaper, KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, microbiomeDataSets, MouseGastrulationData, MouseThymusAgeing, raerdata, scRNAseq, spatialLIBD, systemPipeRdata, TENxBUSData, VariantToolsData, ExpHunterSuite, GeoMxWorkflows, crispRdesignR, DCLEAR, decompDL, EEMDlstm, geno2proteo, kmeRs, locuszoomr, MicroSEC, MOCHA, oncoPredict, pathwayTMB, RNAseqQC, RobLoxBioC, SCRIP, Signac, spectralAnalysis, TaxaNorm, toxpiR, treediff, TSdeeplearning |
| Suggests Me |
AIMS, ASSET, ASURAT, AlphaMissenseR, BLMA, BUScorrect, BUSseq, BaalChIP, BiRewire, BiocParallel, BiocStyle, BloodGen3Module, CAFE, CDI, CHRONOS, CINdex, CNORfeeder, CNORfuzzy, COSNet, CausalR, CexoR, ChIPXpress, ChIPanalyser, ClustAll, DEsubs, DExMA, DMRcaller, DMRcate, ENmix, EnhancedVolcano, EpiMix, EventPointer, FGNet, GEM, GEOquery, GMRP, GSVA, GWASTools, GateFinder, GeneNetworkBuilder, GeneOverlap, GeoTcgaData, GrafGen, GreyListChIP, HIREewas, HPiP, Harman, HiCDCPlus, IFAA, INPower, KEGGREST, LACE, MAGAR, MBttest, MOSClip, MWASTools, MatrixQCvis, MatrixRider, Mergeomics, MetCirc, MetNet, MetaboSignal, MsQuality, MultiMed, MultiRNAflow, MungeSumstats, NetSAM, OMICsPCA, OncoScore, PAA, PCAtools, Path2PPI, PathNet, PhenStat, RBGL, REBET, RESOLVE, RGraph2js, ROSeq, ROntoTools, RTN, RTNduals, RTNsurvival, Rgraphviz, SAIGEgds, SANTA, SCArray, SICtools, SIMAT, SIMLR, SNPRelate, STATegRa, STRINGdb, SUITOR, SeqArray, SingleR, SparseSignatures, TCC, TFEA.ChIP, TIN, TRONCO, TreeAndLeaf, Uniquorn, VERSO, acde, adverSCarial, aggregateBioVar, baySeq, bigmelon, biocViews, biosigner, bnem, borealis, ccrepe, cellmigRation, chihaya, cleanUpdTSeq, clipper, clustComp, consensus, cpvSNP, cypress, epiNEM, fCCAC, fcScan, fgga, flowCut, flowTime, fmrs, gCrisprTools, gdsfmt, geNetClassifier, geneRxCluster, geneplast, genomation, ginmappeR, h5vc, hiAnnotator, hierGWAS, hypergraph, iCARE, iClusterPlus, illuminaio, immunotation, kebabs, magpie, massiR, metagene2, methylCC, methylInheritance, miRBaseConverter, miRcomp, microbiome, mirIntegrator, mnem, mosbi, motifStack, multiClust, ncRNAtools, nempi, nucleoSim, panelcn.mops, pathview, pepXMLTab, phenomis, powerTCR, proBAMr, qpgraph, quantro, rBiopaxParser, rCGH, rTRM, rcellminer, rfaRm, rgsepd, riboSeqR, ropls, sangerseqR, sarks, scDataviz, scmeth, scp, screenCounter, scry, segmentSeq, seqPattern, seqTools, sigFeature, sigsquared, similaRpeak, singleCellTK, slingshot, spatialHeatmap, specL, systemPipeTools, tRNAdbImport, tidytof, transcriptogramer, traseR, tripr, xcore, ENCODExplorerData, geneplast.data, ConnectivityMap, FieldEffectCrc, grndata, HarmanData, healthyControlsPresenceChecker, microRNAome, RegParallel, scMultiome, sesameData, xcoredata, adjclust, aroma.affymetrix, asteRisk, ggpicrust2, gkmSVM, GSEMA, MarZIC, NutrienTrackeR, openSkies, pagoda2, Platypus, polyRAD, Rediscover, Seurat |
