hdxmsqc
This is the development version of hdxmsqc; for the stable release version, see hdxmsqc.
An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments
Bioconductor version: Development (3.21)
The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.
Author: Oliver M. Crook [aut, cre] (ORCID:
Maintainer: Oliver M. Crook <oliver.crook at stats.ox.ac.uk>
citation("hdxmsqc")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("hdxmsqc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hdxmsqc")| Qualityt control for differential hydrogen deuterium exchange mass spectrometry data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, MassSpectrometry, Metabolomics, Proteomics, QualityControl, Software |
| Version | 1.3.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (0.5 years) |
| License | file LICENSE |
| Depends | R (>= 4.3), QFeatures, S4Vectors, Spectra |
| Imports | dplyr, tidyr, ggplot2, BiocStyle, knitr, methods, grDevices, stats, MsCoreUtils |
| System Requirements | |
| URL | http://github.com/ococrook/hdxmsqc |
| Bug Reports | https://github.com/ococrook/hdxmsqc/issues |
See More
| Suggests | RColorBrewer, pheatmap, MASS, patchwork, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | hdxmsqc_1.3.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/hdxmsqc |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/hdxmsqc |
| Bioc Package Browser | https://code.bioconductor.org/browse/hdxmsqc/ |
| Package Short Url | https://bioconductor.org/packages/hdxmsqc/ |
| Package Downloads Report | Download Stats |