Rarr

This is the development version of Rarr; for the stable release version, see Rarr.

Read Zarr Files in R

Bioconductor version: Development (3.21)

The Zarr specification defines a format for chunked, compressed, N-dimensional arrays. It's design allows efficient access to subsets of the stored array, and supports both local and cloud storage systems. Rarr aims to implement this specifcation in R with minimal reliance on an external tools or libraries.

Author: Mike Smith [aut, cre] (ORCID: )

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("Rarr")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rarr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rarr")

Working with Zarr arrays in R	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Software
Version	1.7.0
In Bioconductor since	BioC 3.17 (R-4.3) (1.5 years)
License	MIT + file LICENSE
Depends	DelayedArray, BiocGenerics
Imports	jsonlite, httr, stringr, R.utils, utils, paws.storage, methods
System Requirements	GNU make
URL	https://github.com/grimbough/Rarr
Bug Reports	https://github.com/grimbough/Rarr/issues

Suggests	BiocStyle, covr, knitr, tinytest, mockery
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rarr_1.7.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/Rarr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rarr
Bioc Package Browser	https://code.bioconductor.org/browse/Rarr/
Package Short Url	https://bioconductor.org/packages/Rarr/
Package Downloads Report	Download Stats