orthosData

This is the development version of orthosData; for the stable release version, see orthosData.

Data for the orthos package

Bioconductor version: Development (3.21)

`orthosData` is the companion ExperimentData package to the `orthos` R package for mechanistic studies using differential gene expression experiments. It provides functions for retrieval from ExperimentHub and local caching of the models and datasets used internally in orthos.

Author: Panagiotis Papasaikas [aut, cre] (ORCID: ), Charlotte Soneson [aut] (ORCID: ), Michael Stadler [aut] (ORCID: ), Friedrich Miescher Institute for Biomedical Research [cph]

Maintainer: Panagiotis Papasaikas <panagiotis.papasaikas at fmi.ch>

Citation (from within R, enter citation("orthosData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("orthosData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("orthosData")

1. Introduction to orthos	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, RNASeqData
Version	1.3.0
License	MIT + file LICENSE
Depends
Imports	AnnotationHub, BiocFileCache, ExperimentHub, HDF5Array, stringr, SummarizedExperiment
System Requirements
URL	https://github.com/fmicompbio/orthosData
Bug Reports	https://github.com/fmicompbio/orthosData/issues

Suggests	BiocStyle, ggplot2, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me	orthos
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	orthosData_1.3.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/orthosData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/orthosData
Package Short Url	https://bioconductor.org/packages/orthosData/
Package Downloads Report	Download Stats