ndexr

This is the development version of ndexr; for the stable release version, see ndexr.

NDEx R client library

Bioconductor version: Development (3.21)

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Florian Auer [cre, aut] (ORCID: ), Frank Kramer [ctb], Alex Ishkin [ctb], Dexter Pratt [ctb]

Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("ndexr")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ndexr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ndexr")

NDExR Vignette	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Network, Pathways, Software
Version	1.29.0
In Bioconductor since	BioC 3.6 (R-3.4) (7 years)
License	BSD_3_clause + file LICENSE
Depends	RCX
Imports	httr, jsonlite, plyr, tidyr
System Requirements
URL	https://github.com/frankkramer-lab/ndexr
Bug Reports	https://github.com/frankkramer-lab/ndexr/issues

Suggests	BiocStyle, testthat, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ndexr_1.29.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ndexr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ndexr
Bioc Package Browser	https://code.bioconductor.org/browse/ndexr/
Package Short Url	https://bioconductor.org/packages/ndexr/
Package Downloads Report	Download Stats