GSE159526

This is the development version of GSE159526; for the stable release version, see GSE159526.

Placental cell DNA methylation data from GEO accession GSE159526

Bioconductor version: Development (3.21)

19 term and 9 first trimester placental chorionic villi and matched cell-sorted samples ran on Illumina HumanMethylationEPIC DNA methylation microarrays. This data was made available on GEO accession [GSE159526](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159526). Both the raw and processed data has been made available on \code{ExperimentHub}. Raw unprocessed data formatted as an RGChannelSet object for integration and normalization using minfi and other existing Bioconductor packages. Processed normalized data is also available as a DNA methylation \code{matrix}, with a corresponding phenotype information as a \code{data.frame} object.

Author: Victor Yuan [aut, cre] (ORCID: )

Maintainer: Victor Yuan <victor.2wy at gmail.com>

Citation (from within R, enter citation("GSE159526")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GSE159526")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSE159526")

Introduction to GSE159526	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, GEO, Genome, Homo_sapiens_Data, MethylationArrayData, Tissue
Version	1.11.0
License	MIT + file LICENSE
Depends
Imports
System Requirements
URL	https://github.com/wvictor14/GSE159526
Bug Reports	https://github.com/wvictor14/GSE159526/issues

Suggests	ExperimentHub, BiocStyle, RefManageR, knitr, rmarkdown, testthat, minfi, tibble, sessioninfo
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GSE159526_1.11.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/GSE159526
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GSE159526
Package Short Url	https://bioconductor.org/packages/GSE159526/
Package Downloads Report	Download Stats