MsDataHub
This is the development version of MsDataHub; for the stable release version, see MsDataHub.
Mass Spectrometry Data on ExperimentHub
Bioconductor version: Development (3.21)
The MsDataHub package uses the ExperimentHub infrastructure to distribute raw mass spectrometry data files, peptide spectrum matches or quantitative data from proteomics and metabolomics experiments.
Author: Laurent Gatto [aut, cre] (ORCID:
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
citation("MsDataHub")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MsDataHub")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsDataHub")| Mass Spectrometry Data on ExperimentHub | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentHubSoftware, MassSpectrometry, Metabolomics, Proteomics, Software |
| Version | 1.7.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | ExperimentHub, utils |
| System Requirements | |
| URL | https://rformassspectrometry.github.io/MsDataHub |
| Bug Reports | https://github.com/RforMassSpectrometry/MsDataHub/issues |
See More
| Suggests | ExperimentHubData, DT, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), Spectra, mzR, PSMatch, QFeatures(>= 1.13.3) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | QFeatures, scp |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MsDataHub_1.7.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MsDataHub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MsDataHub |
| Bioc Package Browser | https://code.bioconductor.org/browse/MsDataHub/ |
| Package Short Url | https://bioconductor.org/packages/MsDataHub/ |
| Package Downloads Report | Download Stats |