HPAanalyze
This is the development version of HPAanalyze; for the stable release version, see HPAanalyze.
Retrieve and analyze data from the Human Protein Atlas
Bioconductor version: Development (3.21)
Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.
Author: Anh Nhat Tran [aut, cre]
Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>
Citation (from within R, enter
citation("HPAanalyze")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("HPAanalyze")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HPAanalyze")| 1. Quick-start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function with HPAanalyze | HTML | R Script |
| 2. In-depth: Working with Human Protein Atlas (HPA) data in R with HPAanalyze | HTML | R Script |
| 3. Tutorial: Combine HPAanalyze with your Human Protein Atlas (HPA) queries | HTML | R Script |
| 4. Tutorial: Working with Human Protein Atlas (HPA) xml files offline | HTML | R Script |
| 5. Tutorial: Export Human Protein Atlas (HPA) data as JSON | HTML | R Script |
| 6. Tutorial: Download histology images from the Human Protein Atlas | HTML | R Script |
| 99. Code for figures from HPAanalyze paper | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CellBiology, Proteomics, Software, Visualization |
| Version | 1.25.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (6 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.5.0) |
| Imports | dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra |
| System Requirements | |
| URL | https://github.com/anhtr/HPAanalyze |
| Bug Reports | https://github.com/anhtr/HPAanalyze/issues |
See More
| Suggests | knitr, rmarkdown, markdown, devtools, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HPAanalyze_1.25.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HPAanalyze |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HPAanalyze |
| Bioc Package Browser | https://code.bioconductor.org/browse/HPAanalyze/ |
| Package Short Url | https://bioconductor.org/packages/HPAanalyze/ |
| Package Downloads Report | Download Stats |