sparseMatrixStats
This is the development version of sparseMatrixStats; for the stable release version, see sparseMatrixStats.
Summary Statistics for Rows and Columns of Sparse Matrices
Bioconductor version: Development (3.21)
High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format. This package is inspired by the matrixStats package by Henrik Bengtsson.
Author: Constantin Ahlmann-Eltze [aut, cre] (ORCID:
Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>
citation("sparseMatrixStats")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("sparseMatrixStats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sparseMatrixStats")| sparseMatrixStats | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 1.19.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | MIT + file LICENSE |
| Depends | MatrixGenerics(>= 1.5.3) |
| Imports | Rcpp, Matrix, matrixStats (>= 0.60.0), methods |
| System Requirements | C++11 |
| URL | https://github.com/const-ae/sparseMatrixStats |
| Bug Reports | https://github.com/const-ae/sparseMatrixStats/issues |
See More
| Suggests | testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | DelayedMatrixStats, GSVA, SPOTlight, SimBu, atena, ccImpute, concordexR, scone, smartid, smoothclust, adjclust, CRMetrics, GrabSVG, mombf, scBSP |
| Suggests Me | MatrixGenerics, SpatialFeatureExperiment, StabMap, miloR, scPCA, scrapper, scuttle, zinbwave, singleCellHaystack |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sparseMatrixStats_1.19.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/sparseMatrixStats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sparseMatrixStats |
| Bioc Package Browser | https://code.bioconductor.org/browse/sparseMatrixStats/ |
| Package Short Url | https://bioconductor.org/packages/sparseMatrixStats/ |
| Package Downloads Report | Download Stats |