sechm
This is the development version of sechm; for the stable release version, see sechm.
sechm: Complex Heatmaps from a SummarizedExperiment
Bioconductor version: Development (3.21)
sechm provides a simple interface between SummarizedExperiment objects and the ComplexHeatmap package. It enables plotting annotated heatmaps from SE objects, with easy access to rowData and colData columns, and implements a number of features to make the generation of heatmaps easier and more flexible. These functionalities used to be part of the SEtools package.
Author: Pierre-Luc Germain [cre, aut] (ORCID:
Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>
citation("sechm")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("sechm")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sechm")| sechm | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Software, Visualization |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0), SummarizedExperiment, ComplexHeatmap |
| Imports | S4Vectors, seriation, circlize, methods, randomcoloR, stats, grid, grDevices, matrixStats |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/plger/sechm |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | SEtools |
| Imports Me | broadSeq |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sechm_1.15.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/sechm |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sechm |
| Bioc Package Browser | https://code.bioconductor.org/browse/sechm/ |
| Package Short Url | https://bioconductor.org/packages/sechm/ |
| Package Downloads Report | Download Stats |