clevRvis
This is the development version of clevRvis; for the stable release version, see clevRvis.
Visualization Techniques for Clonal Evolution
Bioconductor version: Development (3.21)
clevRvis provides a set of visualization techniques for clonal evolution. These include shark plots, dolphin plots and plaice plots. Algorithms for time point interpolation as well as therapy effect estimation are provided. Phylogeny-aware color coding is implemented. A shiny-app for generating plots interactively is additionally provided.
Author: Sarah Sandmann [aut, cre] (ORCID:
Maintainer: Sarah Sandmann <sarah.sandmann at uni-muenster.de>
citation("clevRvis")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("clevRvis")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("clevRvis")| ClEvR Viz vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ShinyApps, Software, Visualization |
| Version | 1.7.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | LGPL-3 |
| Depends | |
| Imports | shiny, ggraph, igraph, ggiraph, cowplot, htmlwidgets, readxl, dplyr, readr, purrr, tibble, patchwork, R.utils, shinyWidgets, colorspace, shinyhelper, shinycssloaders, ggnewscale, shinydashboard, DT, colourpicker, grDevices, methods, utils, stats, ggplot2, magrittr, tools |
| System Requirements | |
| URL | https://github.com/sandmanns/clevRvis |
| Bug Reports | https://github.com/sandmanns/clevRvis/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | clevRvis_1.7.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/clevRvis |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/clevRvis |
| Bioc Package Browser | https://code.bioconductor.org/browse/clevRvis/ |
| Package Short Url | https://bioconductor.org/packages/clevRvis/ |
| Package Downloads Report | Download Stats |