CTdata

This is the development version of CTdata; for the stable release version, see CTdata.

Data companion to CTexploreR

Bioconductor version: Development (3.21)

Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.

Author: Axelle Loriot [aut] (ORCID: ), Julie Devis [aut] (ORCID: ), Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths, cre] (ORCID: )

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("CTdata")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CTdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CTdata")

Cancer Testis Datasets	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Epigenetics, ExperimentHubSoftware, GeneExpression, Software, Transcriptomics
Version	1.7.0
In Bioconductor since	BioC 3.17 (R-4.3) (1.5 years)
License	Artistic-2.0
Depends	R (>= 4.2)
Imports	ExperimentHub, utils
System Requirements
URL
Bug Reports	https://github.com/UCLouvain-CBIO/CTdata/issues

Suggests	testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment, SingleCellExperiment
Linking To
Enhances
Depends On Me	CTexploreR
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CTdata_1.7.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/CTdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CTdata
Bioc Package Browser	https://code.bioconductor.org/browse/CTdata/
Package Short Url	https://bioconductor.org/packages/CTdata/
Package Downloads Report	Download Stats