dagLogo
This is the development version of dagLogo; for the stable release version, see dagLogo.
dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory
Bioconductor version: Development (3.21)
Visualize significant conserved amino acid sequence pattern in groups based on probability theory.
Author: Jianhong Ou, Haibo Liu, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou at duke.edu>
Citation (from within R, enter
citation("dagLogo")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("dagLogo")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("dagLogo")| dagLogo Vignette | HTML | R Script |
| Reference Manual |
Details
| biocViews | SequenceMatching, Software, Visualization |
| Version | 1.45.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.0.1), methods, grid |
| Imports | pheatmap, Biostrings, UniProt.ws, BiocGenerics, utils, biomaRt, motifStack, httr |
| System Requirements | |
| URL |
See More
| Suggests | XML, grImport, grImport2, BiocStyle, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | dagLogo_1.45.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/dagLogo |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/dagLogo |
| Bioc Package Browser | https://code.bioconductor.org/browse/dagLogo/ |
| Package Short Url | https://bioconductor.org/packages/dagLogo/ |
| Package Downloads Report | Download Stats |