mirTarRnaSeq

This is the development version of mirTarRnaSeq; for the stable release version, see mirTarRnaSeq.

mirTarRnaSeq

Bioconductor version: Development (3.21)

mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.

Author: Mercedeh Movassagh [aut, cre] (ORCID: ), Sarah Morton [aut], Rafael Irizarry [aut], Jeffrey Bailey [aut], Joseph N Paulson [aut]

Maintainer: Mercedeh Movassagh <mercedeh at ds.dfci.harvard.edu>

Citation (from within R, enter citation("mirTarRnaSeq")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mirTarRnaSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mirTarRnaSeq")

mirTarRnaSeq	PDF	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, Regression, Sequencing, SmallRNA, Software, TimeCourse, miRNA
Version	1.15.0
In Bioconductor since	BioC 3.13 (R-4.1) (3.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.1.0), ggplot2
Imports	purrr, MASS, pscl, assertthat, caTools, dplyr, pheatmap, reshape2, corrplot, grDevices, graphics, stats, utils, data.table, R.utils, viridis
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown, R.cache, SPONGE
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mirTarRnaSeq_1.15.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/mirTarRnaSeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mirTarRnaSeq
Bioc Package Browser	https://code.bioconductor.org/browse/mirTarRnaSeq/
Package Short Url	https://bioconductor.org/packages/mirTarRnaSeq/
Package Downloads Report	Download Stats