eiR

This is the development version of eiR; for the stable release version, see eiR.

Accelerated similarity searching of small molecules

Bioconductor version: Development (3.21)

The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.

Author: Kevin Horan, Yiqun Cao and Tyler Backman

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("eiR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("eiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eiR")

eiR: Accelerated Similarity Searching of Small Molecules	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization
Version	1.47.0
In Bioconductor since	BioC 2.12 (R-3.0) (11.5 years)
License	Artistic-2.0
Depends	R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI
Imports	snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics, RcppAnnoy (>= 0.0.9)
System Requirements
URL	https://github.com/girke-lab/eiR

Suggests	BiocStyle, knitcitations, knitr, knitrBootstrap, rmarkdown, RSQLite
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	eiR_1.47.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/eiR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/eiR
Bioc Package Browser	https://code.bioconductor.org/browse/eiR/
Package Short Url	https://bioconductor.org/packages/eiR/
Package Downloads Report	Download Stats