iSEEindex

This is the development version of iSEEindex; for the stable release version, see iSEEindex.

iSEE extension for a landing page to a custom collection of data sets

Bioconductor version: Development (3.21)

This package provides an interface to any collection of data sets within a single iSEE web-application. The main functionality of this package is to define a custom landing page allowing app maintainers to list a custom collection of data sets that users can selected from and directly load objects into an iSEE web-application.

Author: Kevin Rue-Albrecht [aut, cre] (ORCID: ), Thomas Sandmann [ctb] (ORCID: ), Federico Marini [aut] (ORCID: ), Denali Therapeutics [fnd]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEindex")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iSEEindex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEindex")

Adding custom header and footer to the landing page	HTML	R Script
Implementing custom iSEEindex resources	HTML	R Script
Introduction to iSEEindex	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	1.5.0
In Bioconductor since	BioC 3.18 (R-4.3) (1 year)
License	Artistic-2.0
Depends	SummarizedExperiment, SingleCellExperiment
Imports	BiocFileCache, DT, iSEE, methods, paws.storage, rintrojs, shiny, shinydashboard, shinyjs, stringr, urltools, utils
System Requirements
URL	https://github.com/iSEE/iSEEindex
Bug Reports	https://support.bioconductor.org/t/iSEEindex

Suggests	BiocStyle, covr, knitr, RefManageR, rmarkdown, markdown, scRNAseq, sessioninfo, testthat (>= 3.0.0), yaml
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iSEEindex_1.5.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/iSEEindex
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iSEEindex
Bioc Package Browser	https://code.bioconductor.org/browse/iSEEindex/
Package Short Url	https://bioconductor.org/packages/iSEEindex/
Package Downloads Report	Download Stats