spatialDmelxsim
This is the development version of spatialDmelxsim; for the stable release version, see spatialDmelxsim.
Spatial allelic expression counts for fly cross embryo
Bioconductor version: Development (3.21)
Spatial allelic expression counts from Combs & Fraser (2018), compiled into a SummarizedExperiment object. This package contains data of allelic expression counts of spatial slices of a fly embryo, a Drosophila melanogaster x Drosophila simulans cross. See the CITATION file for the data source, and the associated script for how the object was constructed from publicly available data.
Author: Michael Love [aut, cre]
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
citation("spatialDmelxsim")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("spatialDmelxsim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spatialDmelxsim")
spatialDmelxsim | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, GEO, RNASeqData, SequencingData |
Version | 1.11.0 |
License | GPL-3 |
Depends | R (>= 4.1), ExperimentHub, SummarizedExperiment |
Imports | utils |
System Requirements | |
URL | https://github.com/mikelove/spatialDmelxsim |
Bug Reports | https://github.com/mikelove/spatialDmelxsim/issues |
See More
Suggests | knitr, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | spatialDmelxsim_1.11.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/spatialDmelxsim |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spatialDmelxsim |
Package Short Url | https://bioconductor.org/packages/spatialDmelxsim/ |
Package Downloads Report | Download Stats |