derfinderHelper
This is the development version of derfinderHelper; for the stable release version, see derfinderHelper.
derfinder helper package
Bioconductor version: Development (3.21)
Helper package for speeding up the derfinder package when using multiple cores. This package is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.
Author: Leonardo Collado-Torres [aut, cre] (ORCID:
Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>
citation("derfinderHelper")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("derfinderHelper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software |
| Version | 1.41.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.2) |
| Imports | IRanges(>= 1.99.27), Matrix, methods, S4Vectors(>= 0.2.2) |
| System Requirements | |
| URL | https://github.com/leekgroup/derfinderHelper |
| Bug Reports | https://support.bioconductor.org/t/derfinderHelper |
See More
| Suggests | sessioninfo, knitr (>= 1.6), BiocStyle(>= 2.5.19), RefManageR, rmarkdown (>= 0.3.3), testthat, covr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/derfinderHelper |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/derfinderHelper |
| Package Short Url | https://bioconductor.org/packages/derfinderHelper/ |
| Package Downloads Report | Download Stats |