raerdata
This is the development version of raerdata; for the stable release version, see raerdata.
A collection of datasets for use with raer package
Bioconductor version: Development (3.21)
raerdata is an ExperimentHub package that provides a collection of files useful for demostrating functionality in the raer package. Datasets include 10x genomics scRNA-seq, bulk RNA-seq, and paired whole-genome and RNA-seq data. Additionally databases of human and mouse RNA editing sites are provided.
Author: Kent Riemondy [aut, cre] (ORCID:
Maintainer: Kent Riemondy <kent.riemondy at cuanschutz.edu>
citation("raerdata")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("raerdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("raerdata")| raerdata | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, PackageTypeData, RNASeqData, SequencingData, SingleCellData |
| Version | 1.3.0 |
| License | MIT + file LICENSE |
| Depends | |
| Imports | ExperimentHub, Rsamtools, BiocGenerics, rtracklayer, SingleCellExperiment |
| System Requirements | |
| URL | https://github.com/rnabioco/raerdata |
| Bug Reports | https://github.com/rnabioco/raerdata/issues |
See More
| Suggests | rmarkdown, knitr, BiocStyle, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | raer |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | raerdata_1.3.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/raerdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/raerdata |
| Package Short Url | https://bioconductor.org/packages/raerdata/ |
| Package Downloads Report | Download Stats |