CRISPRball
This is the development version of CRISPRball; for the stable release version, see CRISPRball.
Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering
Bioconductor version: Development (3.21)
A Shiny application for visualization, exploration, comparison, and filtering of CRISPR screens analyzed with MAGeCK RRA or MLE. Features include interactive plots with on-click labeling, full customization of plot aesthetics, data upload and/or download, and much more. Quickly and easily explore your CRISPR screen results and generate publication-quality figures in seconds.
Author: Jared Andrews [aut, cre] (ORCID:
Maintainer: Jared Andrews <jared.andrews07 at gmail.com>
citation("CRISPRball")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CRISPRball")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CRISPR, GUI, QualityControl, ShinyApps, Software, Visualization |
| Version | 1.3.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (0.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.4.0), shinyBS |
| Imports | DT, shiny, grid, ComplexHeatmap, InteractiveComplexHeatmap, graphics, stats, ggplot2, plotly, shinyWidgets, shinycssloaders, shinyjqui, dittoSeq, matrixStats, colourpicker, shinyjs, MAGeCKFlute, circlize, PCAtools, utils, grDevices, htmlwidgets, methods |
| System Requirements | |
| URL | https://github.com/j-andrews7/CRISPRball |
| Bug Reports | https://support.bioconductor.org/ |
See More
| Suggests | BiocStyle, msigdbr, depmap, pool, RSQLite, mygene, testthat (>= 3.0.0), knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CRISPRball |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CRISPRball |
| Package Short Url | https://bioconductor.org/packages/CRISPRball/ |
| Package Downloads Report | Download Stats |