yamss
This is the development version of yamss; for the stable release version, see yamss.
Tools for high-throughput metabolomics
Bioconductor version: Development (3.21)
Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis. At the core of these methods is a peak detection phase that pools information across all samples simultaneously. This is in contrast to other methods that detect peaks in a sample-by-sample basis.
Author: Leslie Myint [cre, aut] (ORCID:
Maintainer: Leslie Myint <leslie.myint at gmail.com>
citation("yamss")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("yamss")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("yamss")| yamss User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | MassSpectrometry, Metabolomics, PeakDetection, Software |
| Version | 1.33.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.3.0), methods, BiocGenerics(>= 0.15.3), SummarizedExperiment |
| Imports | IRanges, stats, S4Vectors, EBImage, Matrix, mzR, data.table, grDevices, limma |
| System Requirements | |
| URL | https://github.com/hansenlab/yamss |
| Bug Reports | https://github.com/hansenlab/yamss/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, digest, mtbls2, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | yamss_1.33.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/yamss |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/yamss |
| Bioc Package Browser | https://code.bioconductor.org/browse/yamss/ |
| Package Short Url | https://bioconductor.org/packages/yamss/ |
| Package Downloads Report | Download Stats |