HighlyReplicatedRNASeq
This is the development version of HighlyReplicatedRNASeq; for the stable release version, see HighlyReplicatedRNASeq.
Collection of Bulk RNA-Seq Experiments With Many Replicates
Bioconductor version: Development (3.21)
Gene-level count matrix data for bulk RNA-seq dataset with many replicates. The data are provided as easy to use SummarizedExperiment objects. The source data that is made accessible through this package comes from https://github.com/bartongroup/profDGE48.
Author: Constantin Ahlmann-Eltze [aut, cre] (ORCID:
Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>
citation("HighlyReplicatedRNASeq")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("HighlyReplicatedRNASeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HighlyReplicatedRNASeq")| Exploring the 86 bulk RNA-seq samples from the Schurch et al. (2016) study | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData |
| Version | 1.17.0 |
| License | MIT + file LICENSE |
| Depends | SummarizedExperiment, ExperimentHub |
| Imports | S4Vectors |
| System Requirements | |
| URL | https://github.com/const-ae/HighlyReplicatedRNASeq |
| Bug Reports | https://github.com/const-ae/HighlyReplicatedRNASeq/issues |
See More
| Suggests | BiocStyle, BiocFileCache, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HighlyReplicatedRNASeq_1.17.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HighlyReplicatedRNASeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HighlyReplicatedRNASeq |
| Package Short Url | https://bioconductor.org/packages/HighlyReplicatedRNASeq/ |
| Package Downloads Report | Download Stats |