snifter

This is the development version of snifter; for the stable release version, see snifter.

R wrapper for the python openTSNE library

Bioconductor version: Development (3.21)

Provides an R wrapper for the implementation of FI-tSNE from the python package openTNSE. See Poličar et al. (2019) and the algorithm described by Linderman et al. (2018) .

Author: Alan O'Callaghan [aut, cre], Aaron Lun [aut]

Maintainer: Alan O'Callaghan <alan.ocallaghan at outlook.com>

Citation (from within R, enter citation("snifter")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("snifter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("snifter")

Introduction to snifter	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DimensionReduction, Sequencing, SingleCell, Software, Visualization
Version	1.17.0
In Bioconductor since	BioC 3.12 (R-4.0) (4 years)
License	GPL-3
Depends	R (>= 4.0.0)
Imports	basilisk, reticulate, irlba, stats, assertthat
System Requirements
URL	https://bioconductor.org/packages/snifter
Bug Reports	https://github.com/Alanocallaghan/snifter/issues

Suggests	knitr, rmarkdown, BiocStyle, ggplot2, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	scater
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	snifter_1.17.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/snifter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/snifter
Bioc Package Browser	https://code.bioconductor.org/browse/snifter/
Package Short Url	https://bioconductor.org/packages/snifter/
Package Downloads Report	Download Stats