AnVILGCP

This is the development version of AnVILGCP; for the stable release version, see AnVILGCP.

The GCP R Client for the AnVIL

Bioconductor version: Development (3.21)

The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL platform. The package is designed to work with the AnVIL package. User-level interaction with this package should be minimal.

Author: Marcel Ramos [aut, cre] (ORCID: ), Nitesh Turaga [aut], Martin Morgan [aut] (ORCID: )

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("AnVILGCP")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AnVILGCP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILGCP")

Working with AnVIL on GCP	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Infrastructure, Software, ThirdPartyClient
Version	1.1.0
In Bioconductor since	BioC 3.20 (R-4.4) (< 6 months)
License	Artistic-2.0
Depends
Imports	AnVILBase, BiocBaseUtils, dplyr, httr, jsonlite, parallel, methods, rlang, stats, tibble, tidyr, utils
System Requirements	gsutil, gcloud
URL	https://github.com/Bioconductor/AnVILGCP
Bug Reports	https://github.com/Bioconductor/AnVILGCP/issues

Suggests	AnVIL, BiocStyle, httr2, knitr, rmarkdown, testthat, withr
Linking To
Enhances
Depends On Me	AnVILWorkflow, terraTCGAdata
Imports Me	AnVILPublish
Suggests Me	AnVILBase, AnVIL
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AnVILGCP_1.1.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/AnVILGCP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AnVILGCP
Bioc Package Browser	https://code.bioconductor.org/browse/AnVILGCP/
Package Short Url	https://bioconductor.org/packages/AnVILGCP/
Package Downloads Report	Download Stats