pdInfoBuilder
This is the development version of pdInfoBuilder; for the stable release version, see pdInfoBuilder.
Platform Design Information Package Builder
Bioconductor version: Development (3.21)
Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.
Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho
Maintainer: Benilton Carvalho <benilton at unicamp.br>
citation("pdInfoBuilder")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("pdInfoBuilder")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pdInfoBuilder")| Building Annotation Packages with pdInfoBuilder for Use with the oligo Package | ||
| PDInfo Package Building Affymetrix Mapping Chips | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, Infrastructure, Software |
| Version | 1.71.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.0), methods, Biobase(>= 2.27.3), RSQLite (>= 1.0.0), affxparser(>= 1.39.4), oligo(>= 1.31.5) |
| Imports | Biostrings(>= 2.35.12), BiocGenerics(>= 0.13.11), DBI (>= 0.3.1), IRanges(>= 2.1.43), oligoClasses(>= 1.29.6), S4Vectors(>= 0.5.22) |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | maqcExpression4plex, aroma.affymetrix, maGUI |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pdInfoBuilder_1.71.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/pdInfoBuilder |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pdInfoBuilder |
| Bioc Package Browser | https://code.bioconductor.org/browse/pdInfoBuilder/ |
| Package Short Url | https://bioconductor.org/packages/pdInfoBuilder/ |
| Package Downloads Report | Download Stats |