XVector
This is the development version of XVector; for the stable release version, see XVector.
Foundation of external vector representation and manipulation in Bioconductor
Bioconductor version: Development (3.21)
Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).
Author: Hervé Pagès and Patrick Aboyoun
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
Citation (from within R, enter
citation("XVector")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("XVector")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 0.47.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0.0), methods, BiocGenerics(>= 0.37.0), S4Vectors(>= 0.27.12), IRanges(>= 2.23.9) |
| Imports | methods, utils, tools, zlibbioc, BiocGenerics, S4Vectors, IRanges |
| System Requirements | |
| URL | https://bioconductor.org/packages/XVector |
| Bug Reports | https://github.com/Bioconductor/XVector/issues |
See More
| Suggests | Biostrings, drosophila2probe, RUnit |
| Linking To | S4Vectors, IRanges |
| Enhances | |
| Depends On Me | Biostrings, triplex |
| Imports Me | BSgenome, CNEr, ChIPsim, DECIPHER, GenomAutomorphism, GenomicFeatures, GenomicRanges, Gviz, HiLDA, IONiseR, IsoformSwitchAnalyzeR, MatrixRider, Modstrings, ProteoDisco, R453Plus1Toolbox, Rsamtools, SparseArray, Structstrings, TFBSTools, VariantAnnotation, compEpiTools, crisprScore, dada2, gcrma, kebabs, monaLisa, ribosomeProfilingQC, rtracklayer, tRNA, tRNAscanImport, tracktables, simMP |
| Suggests Me | IRanges, musicatk |
| Links To Me | Biostrings, CNEr, DECIPHER, MatrixRider, Rsamtools, ShortRead, SparseArray, VariantAnnotation, VariantFiltering, kebabs, pwalign, rtracklayer, triplex |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | XVector_0.47.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/XVector |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/XVector |
| Bioc Package Browser | https://code.bioconductor.org/browse/XVector/ |
| Package Short Url | https://bioconductor.org/packages/XVector/ |
| Package Downloads Report | Download Stats |