rqubic

This is the development version of rqubic; for the stable release version, see rqubic.

Qualitative biclustering algorithm for expression data analysis in R

Bioconductor version: Development (3.21)

This package implements the QUBIC algorithm introduced by Li et al. for the qualitative biclustering with gene expression data.

Author: Jitao David Zhang [aut, cre, ctb] (ORCID: )

Maintainer: Jitao David Zhang <jitao_david.zhang at roche.com>

Citation (from within R, enter citation("rqubic")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rqubic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rqubic")

Qualitative Biclustering with Bioconductor Package rqubic	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, Software
Version	1.53.0
In Bioconductor since	BioC 2.9 (R-2.14) (13 years)
License	GPL-2
Depends
Imports	methods, Biobase, BiocGenerics, biclust
System Requirements
URL

Suggests	RColorBrewer
Linking To
Enhances
Depends On Me
Imports Me	miRSM
Suggests Me	RcmdrPlugin.BiclustGUI
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rqubic_1.53.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/rqubic
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rqubic
Bioc Package Browser	https://code.bioconductor.org/browse/rqubic/
Package Short Url	https://bioconductor.org/packages/rqubic/
Package Downloads Report	Download Stats