4.5 - Heatmap plots

Loading required data for plot

# Load results from previous sections
mae <- get(load("mae.rda"))

Heatmap

Generate a heatmap of paired probes.

pair <- read.csv("result/getPair.hypo.pairs.significant.csv")

heatmapPairs(data = mae, 
             group.col = "definition",
             group1 = "Primary solid Tumor", 
             annotation.col = c("years_smoked","gender"),
             group2 = "Solid Tissue Normal",
             pairs = pair,
             filename =  NULL)