From geospatial to spatial omics


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Documentation for package ‘Voyager’ version 1.0.10

Help Pages

annotGeometryMoransI Univariate spatial stiatistics
annotGeometryUnivariate Univariate spatial stiatistics
calculateMoransI Univariate spatial stiatistics
calculateMoransI-method Univariate spatial stiatistics
calculateUnivariate Univariate spatial stiatistics
calculateUnivariate-method Univariate spatial stiatistics
clusterCorrelograms Find clusters of correlogram patterns
clusterMoranPlot Find clusters on the Moran plot
colDataMoransI Univariate spatial stiatistics
colDataUnivariate Univariate spatial stiatistics
colFeatureData Get metadata of colData and rowData
colGeometryMoransI Univariate spatial stiatistics
colGeometryUnivariate Univariate spatial stiatistics
ditto_colors Colorblind friendly palette from dittoSeq
ElbowPlot Plot the elbow plot or scree plot for PCA
getDivergeRange Get beginning and end of palette to center a divergent palette
moranPlot Use ggplot to plot the moran.plot results
plotAnnotGraph Plot spatial graphs
plotCellBin2D Plot cell density as 2D histogram
plotColDataBin2D Plot colData and rowData with 2D histograms
plotColDataFreqpoly Plot frequency polygons for colData and rowData columns
plotColDataHistogram Plot histograms for colData and rowData columns
plotColGraph Plot spatial graphs
plotCorrelogram Plot correlogram
plotDimLoadings Plot top PC loadings of genes
plotLocalResult Plot local results
plotMoranMC Plot Moran/Geary monte carlo results
plotRowDataBin2D Plot colData and rowData with 2D histograms
plotRowDataFreqpoly Plot frequency polygons for colData and rowData columns
plotRowDataHistogram Plot histograms for colData and rowData columns
plotSpatialFeature Plot gene expression in space
rowFeatureData Get metadata of colData and rowData
runMoransI Univariate spatial stiatistics
runUnivariate Univariate spatial stiatistics
spatialReducedDim Plot dimension reduction components in space