ChIPexoQualExample 1.31.0
{r style, echo = FALSE, results = 'asis'} BiocStyle::markdown()
ChIPexoQualExample is an the accompanying example data package for ChIPexoQual. The data was built from the FoxA1 in mouse liver experiment published by (Serandour et al. 2013), by considering only the reads aligned to chr1. To load the package it is necessary to use:
library(ChIPexoQualExample, quietly = TRUE)This package contains these aligned reads and an example run with ChIPexoQual:
## example raw files
list.files(system.file("extdata", package = "ChIPexoQualExample"))## [1] "ChIPexo_carroll_FoxA1_mouse_rep1_chr1.bam"
## [2] "ChIPexo_carroll_FoxA1_mouse_rep1_chr1.bam.bai"
## [3] "ChIPexo_carroll_FoxA1_mouse_rep2_chr1.bam"
## [4] "ChIPexo_carroll_FoxA1_mouse_rep2_chr1.bam.bai"
## [5] "ChIPexo_carroll_FoxA1_mouse_rep3_chr1.bam"
## [6] "ChIPexo_carroll_FoxA1_mouse_rep3_chr1.bam.bai"sessionInfo()## R Under development (unstable) (2024-10-21 r87258)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.1 LTS
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## BLAS: /home/biocbuild/bbs-3.21-bioc/R/lib/libRblas.so
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## time zone: America/New_York
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## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
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## other attached packages:
## [1] BiocStyle_2.35.0
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