rRDPData
This is the development version of rRDPData; for the stable release version, see rRDPData.
Databases for the Default RDP Classifier
Bioconductor version: Development (3.21)
The package provides the data for the RDP Classifier 2.14 released in August 2023. It contains the latest bacterial and archaeal taxonomy training set No. 19 as described in Wang Q, Cole JR. 2024. Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification. Microbiol Resour Announc 0:e01063-23.
Author: Michael Hahsler [aut, cre] (ORCID:
Maintainer: Michael Hahsler <mhahsler at lyle.smu.edu>
citation("rRDPData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rRDPData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | ExperimentData, MicrobiomeData, RNASeqData, SequencingData |
| Version | 1.25.0 |
| License | GPL-2 |
| Depends | rRDP |
| Imports | |
| System Requirements | |
| URL | https://github.com/mhahsler/rRDP |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | rRDP |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rRDPData_1.25.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/rRDPData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rRDPData |
| Package Short Url | https://bioconductor.org/packages/rRDPData/ |
| Package Downloads Report | Download Stats |