msd16s
This is the development version of msd16s; for the stable release version, see msd16s.
Healthy and moderate to severe diarrhea 16S expression data
Bioconductor version: Development (3.21)
Gut 16S sequencing expression data from 992 healthy and moderate-to-severe diarrhetic samples used in 'Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition'.
Author: Joseph N. Paulson, Hector Corrada Bravo, Mihai Pop
Maintainer: Joseph N. Paulson <jpaulson at umiacs.umd.edu>
Citation (from within R, enter
citation("msd16s")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("msd16s")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ExperimentData, MicrobiomeData, SequencingData |
| Version | 1.27.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), Biobase, metagenomeSeq |
| Imports | |
| System Requirements | |
| URL | http://www.cbcb.umd.edu/research/projects/GEMS-pathogen-discovery |
See More
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| Linking To | |
| Enhances | |
| Depends On Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/msd16s |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/msd16s |
| Package Short Url | https://bioconductor.org/packages/msd16s/ |
| Package Downloads Report | Download Stats |