geneLenDataBase

This is the development version of geneLenDataBase; for the stable release version, see geneLenDataBase.

Lengths of mRNA transcripts for a number of genomes

Bioconductor version: Development (3.21)

Length of mRNA transcripts for a number of genomes and gene ID formats, largely based on UCSC table browser. Data objects are provided as individual pieces of information to be retrieved and loaded. A variety of different gene identifiers and genomes is supported to ensure wide applicability.

Author: Matthew Young [aut], Nadia Davidson [aut], Federico Marini [ctb, cre] (ORCID: )

Maintainer: Federico Marini <marinif at uni-mainz.de>

Citation (from within R, enter citation("geneLenDataBase")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("geneLenDataBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, Genome
Version	1.43.0
License	LGPL (>= 2)
Depends	R (>= 2.11.0)
Imports	utils, rtracklayer, GenomicFeatures, txdbmaker
System Requirements
URL	https://github.com/federicomarini/geneLenDataBase
Bug Reports	https://github.com/federicomarini/geneLenDataBase/issues

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/geneLenDataBase
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/geneLenDataBase
Package Short Url	https://bioconductor.org/packages/geneLenDataBase/
Package Downloads Report	Download Stats