MMDiffBamSubset
This is the development version of MMDiffBamSubset; for the stable release version, see MMDiffBamSubset.
Example ChIP-Seq data for the MMDiff package
Bioconductor version: Development (3.21)
Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS
Author: Gabriele Schweikert
Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>
citation("MMDiffBamSubset")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MMDiffBamSubset")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ArrayExpress, ChIPSeqData, DNASeqData, ExperimentData, Genome, Mus_musculus_Data, StemCell |
| Version | 1.41.0 |
| License | LGPL |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | MMDiff2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MMDiff2 |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MMDiffBamSubset_1.41.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MMDiffBamSubset |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MMDiffBamSubset |
| Package Short Url | https://bioconductor.org/packages/MMDiffBamSubset/ |
| Package Downloads Report | Download Stats |