EGSEAdata
This is the development version of EGSEAdata; for the stable release version, see EGSEAdata.
Gene set collections for the EGSEA package
Bioconductor version: Development (3.21)
This package includes gene set collections that are used for the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing. It includes Human and Mouse versions of the MSidDB (Subramanian, et al. (2005) PNAS, 102(43):15545-15550) and GeneSetDB (Araki, et al. (2012) FEBS Open Bio, 2:76-82) collections.
Author: Monther Alhamdoosh, Yifang Hu and Gordon K. Smyth
Maintainer: Monther Alhamdoosh <m.hamdoosh at gmail.com>
citation("EGSEAdata")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("EGSEAdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
| LICENSE | Text |
Details
| biocViews | ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, Rattus_norvegicus_Data |
| Version | 1.33.0 |
| License | file LICENSE |
| Depends | R (>= 3.4) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | EGSEA |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | EGSEA |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | EGSEAdata_1.33.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/EGSEAdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EGSEAdata |
| Package Short Url | https://bioconductor.org/packages/EGSEAdata/ |
| Package Downloads Report | Download Stats |