vtpnet

This is the development version of vtpnet; for the stable release version, see vtpnet.

variant-transcription factor-phenotype networks

Bioconductor version: Development (3.21)

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("vtpnet")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("vtpnet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vtpnet")

vtpnet: variant-transcription factor-network tools	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Network, Software
Version	0.47.0
In Bioconductor since	BioC 2.13 (R-3.0) (11 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach
Imports
System Requirements
URL

Suggests	MotifDb, VariantAnnotation, Rgraphviz
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	vtpnet_0.47.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/vtpnet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/vtpnet
Bioc Package Browser	https://code.bioconductor.org/browse/vtpnet/
Package Short Url	https://bioconductor.org/packages/vtpnet/
Package Downloads Report	Download Stats