clusterStab

This is the development version of clusterStab; for the stable release version, see clusterStab.

Compute cluster stability scores for microarray data

Bioconductor version: Development (3.21)

This package can be used to estimate the number of clusters in a set of microarray data, as well as test the stability of these clusters.

Author: James W. MacDonald, Debashis Ghosh, Mark Smolkin

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("clusterStab")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("clusterStab")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterStab")

clusterStab Overview	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, Software
Version	1.79.0
In Bioconductor since	BioC 1.7 (R-2.2) (19 years)
License	Artistic-2.0
Depends	Biobase(>= 1.4.22), R (>= 1.9.0), methods
Imports
System Requirements
URL

Suggests	fibroEset, genefilter
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	clusterStab_1.79.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/clusterStab
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/clusterStab
Bioc Package Browser	https://code.bioconductor.org/browse/clusterStab/
Package Short Url	https://bioconductor.org/packages/clusterStab/
Package Downloads Report	Download Stats