aCGH
This is the development version of aCGH; for the stable release version, see aCGH.
Classes and functions for Array Comparative Genomic Hybridization data
Bioconductor version: Development (3.21)
Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.
Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>
Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>
citation("aCGH")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("aCGH")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("aCGH")| aCGH Overview | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, DataImport, Genetics, Software |
| Version | 1.85.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.10), cluster, survival, multtest |
| Imports | Biobase, grDevices, graphics, methods, stats, splines, utils |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | CRImage |
| Imports Me | ADaCGH2 |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | aCGH_1.85.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/aCGH |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/aCGH |
| Bioc Package Browser | https://code.bioconductor.org/browse/aCGH/ |
| Package Short Url | https://bioconductor.org/packages/aCGH/ |
| Package Downloads Report | Download Stats |