SELEX

This is the development version of SELEX; for the stable release version, see SELEX.

Functions for analyzing SELEX-seq data

Bioconductor version: Development (3.21)

Tools for quantifying DNA binding specificities based on SELEX-seq data.

Author: Chaitanya Rastogi, Dahong Liu, Lucas Melo, and Harmen J. Bussemaker

Maintainer: Harmen J. Bussemaker <hjb2004 at columbia.edu>

Citation (from within R, enter citation("SELEX")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SELEX")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SELEX")

Motif Discovery with SELEX-seq	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription
Version	1.39.0
In Bioconductor since	BioC 3.1 (R-3.2) (9.5 years)
License	GPL (>=2)
Depends	rJava (>= 0.5-0), Biostrings(>= 2.26.0)
Imports	stats, utils
System Requirements	Java (>= 1.5)
URL	https://bussemakerlab.org/site/software/

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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SELEX_1.39.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/SELEX
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SELEX
Bioc Package Browser	https://code.bioconductor.org/browse/SELEX/
Package Short Url	https://bioconductor.org/packages/SELEX/
Package Downloads Report	Download Stats