MOGAMUN

This is the development version of MOGAMUN; for the stable release version, see MOGAMUN.

MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks

Bioconductor version: Development (3.21)

MOGAMUN is a multi-objective genetic algorithm that identifies active modules in a multiplex biological network. This allows analyzing different biological networks at the same time. MOGAMUN is based on NSGA-II (Non-Dominated Sorting Genetic Algorithm, version II), which we adapted to work on networks.

Author: Elva-María Novoa-del-Toro [aut, cre] (ORCID: )

Maintainer: Elva-María Novoa-del-Toro <elvanov at hotmail.com>

Citation (from within R, enter citation("MOGAMUN")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MOGAMUN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MOGAMUN")

Finding active modules with MOGAMUN	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, Clustering, DifferentialExpression, GraphAndNetwork, Network, Software, SystemsBiology, Transcriptomics
Version	1.17.0
In Bioconductor since	BioC 3.12 (R-4.0) (4 years)
License	GPL-3 + file LICENSE
Depends
Imports	stats, utils, RCy3, stringr, graphics, grDevices, RUnit, BiocParallel, igraph
System Requirements
URL	https://github.com/elvanov/MOGAMUN

Suggests	knitr, markdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MOGAMUN_1.17.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MOGAMUN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MOGAMUN
Bioc Package Browser	https://code.bioconductor.org/browse/MOGAMUN/
Package Short Url	https://bioconductor.org/packages/MOGAMUN/
Package Downloads Report	Download Stats