BioTIP
This is the development version of BioTIP; for the stable release version, see BioTIP.
BioTIP: An R package for characterization of Biological Tipping-Point
Bioconductor version: Development (3.21)
Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.
Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang
Maintainer: Yuxi (Jennifer) Sun <ysun11 at uchicago.edu>, Zhezhen Wang <zhezhen at uchicago.edu>, and X Holly Yang <xyang2 at uchicago.edu>
citation("BioTIP")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BioTIP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BioTIP")| BioTIP- an R package for characterization of Biological Tipping-Point | HTML | R Script |
| Reference Manual |
Details
| biocViews | GeneExpression, RNASeq, Sequencing, Software, Transcription |
| Version | 1.21.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
| License | GPL-2 |
| Depends | R (>= 3.6) |
| Imports | igraph, cluster, psych, stringr, GenomicRanges, MASS, scran |
| System Requirements | |
| URL | https://github.com/xyang2uchicago/BioTIP |
See More
| Suggests | knitr, markdown, base, rmarkdown, ggplot2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BioTIP_1.21.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/BioTIP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BioTIP |
| Bioc Package Browser | https://code.bioconductor.org/browse/BioTIP/ |
| Package Short Url | https://bioconductor.org/packages/BioTIP/ |
| Package Downloads Report | Download Stats |